I don't have an easy answer for you, but I do have an idea to get you started. I teach AP literature and composition, and as part of their summer reading I want my students to review their mythologies. The book I ask them to read is Edith Hamilton's Mythology. (I know--pretty obvious title, isn't it.)
This text is an extensive, thorough review of Greek and Roman gods, which of course are the most commonly studied. It does give cursory coverage of the Norse gods, as well. She does offer a genealogy of sorts, but it isn't as comprehensive as your question implies you would like (all the gods in all the mythologies).
A quick search on line tells me you could probably find a family tree for each mythological family if you spent the time to look, and I've included an enotes link to Hamilton's book so you can check it out for yourself. Hope that gets you started, at least!